Peer-reviewed publications (Corresponding author*)

Celebioglu, B., Roy, J., Farmer, A., English, S., Yu, X., Xu, X., McClean, P.E., Gepts, P., & Parker, T. (2025). Domestication-related changes at PvMYB26 reduce pod shattering in common bean and shed light on the origins of agriculture in the Americas. Molecular Plant. doi: https://doi.org/10.1016/j.molp.2025.12.010.

Roy, J., Oladzad, A., Osborne, C., Lee, Rian., Miklas, P. N., Osorno, J. M., & McClean, P. E. (2025). Diagnostic molecular markers associated with the dominant cranberry (S) and pinto (Pi) seedcoat patterning phenotypes. Annu. Rep. Bean Improv. Coop. 68: 116-117.

Roy*, J., Sreedasyam, A., Osborne, C., Lee, R., and McClean, P. E. (2025). Seed coat transcriptomic profiling of 5-593, a genotype important for genetic studies of seed coat color and patterning in common bean (Phaseolus vulgaris L). BMC Plant Biology 25, 284. https://doi.org/10.1186/s12870-025-06282-7.

Erfatpour, M., Simons, K.J., Roy, J., Figueroa-Cerna, J. C., Lee, R., Beaver, J., McClean, P. E., & Osorno, J. M. 2025. Fine mapping and identification of causal alleles at the Ur-11 locus controlling rust resistance in common bean (Phaseolus vulgaris L.). Theor Appl Genet 138, 55. https://doi.org/10.1007/s00122-025-04836-9.

Hosain, S., Horvath, D. P., Roy, J., Hoque, A., Arifuzzaman, M., and Rahman, M. (2025). Genome-wide association study and genomic prediction for pod-shatter resistance in a diverse rapeseed/canola germplasm collection. Euphytica 221, 54. https://doi.org/10.1007/s10681-025-03494-8.

Rodriguez, O., Roy, J., McClean, P. E., Murillo, D., Simons, K., Khan, N., Figueroa-Cerna, J., and Osorno, J. 2025. Are stem diameter and plant height appropriate traits for upright plant architecture selection in dry bean (Phaseolus vulgaris L.) breeding programs?. ESS Open Archive. February 05, 2025. doi: 10.22541/essoar.173877439.91448819/v1. (Under Review in Crop Science)

Soler-Garzón, A., Lopes, F. S., Roy, J., Clevenger, J., Myers, Z., Korani, W., Song, Q., Porch, T., McClean, P. E., & Miklas, P. N. (2025). Mapping resistance to Sclerotinia white mold in two pinto bean recombinant inbred line populations. The Plant Genome, e20538. https://doi.org/10.1002/tpg2.20538.

Rahman, A., Ahammed, R., Roy, J., Mia, M, L., Kader, M, A., Khan M, A., et al., (2025). Investigating the impact of oligo-chitosan on the growth dynamics and yield traits of Oryza sativa L. ‘BRRI dhan29’ under subtropical conditions. Heliyon, 11 (1), e41552. doi: 10.1016/j.heliyon.2024.e41552.

Soler-Garzón, A., Mulube, M., Kamfwa, K., Lungu, D.M., Hamabwe, S., Roy, J., Salegua, V., Fourie, D., Porch, T.G., McClean, P.E, and Miklas, P.N. (2024). GWAS of resistance to three bacterial diseases in the Andean common bean diversity panel. Frontiers in Plant Science 15:1469381. doi: 10.3389/fpls.2024.1469381

Shaikh, TM., Rahman, M., Anderson, J.V., Kandel, J.S., Roy, J., Vaughn, J., Smith, T., Abernathy, B., Dorn, K., Horvath, D.P. (2024). QTL mapping to identify loci and candidate genes associated with freezing tolerance trait in Camelina sativa. Industrial Crops and Products, 222 (1). doi: 10.1016/j.indcrop.2024.119562.

McClean, P. E., Roy, J., Colbert C. L., Osborne, C., Lee, Rian., Miklas, P. N., & Osorno, J. M. (2024). T and Z, partial seed coat patterning genes in common bean, provide insight into the structure and protein interactions of a plant MBW complex. G3 Genes|Genomes|Genetics, jkae184. doi: 10.1093/g3journal/jkae184

Roy, J., del Río Mendoza, L.E., & Rahman, M. (2024). Genome-wide mapping and genomic prediction conditioning sclerotinia stem rot resistance in different ecotypes of Brassica napus (L.) germplasm collections. Plant Stress 11: 100395. doi: https://doi.org/10.1016/j.stress.2024.100395.

Roy*, J., Soler-Garzón, A., Miklas, P. N., Lee, R., Clevenger, J., Myers, Z., Korani, W., & McClean, P. E. (2023). Integrating de novo QTL-seq and linkage mapping to identify quantitative trait loci conditioning physiological resistance and avoidance to white mold disease in dry bean. The Plant Genome, e20380. https://doi.org/10.1002/tpg2.20380.

Oladzad, A†., Roy*, J †., Mamidi, S., Miklas, P. N., Lee, R., Clevenger, J., Myers, Z., Korani, W., & McClean, P. E. (2023). Linked candidate genes of different functions for white mold resistance in common bean (Phaseolus vulgaris L) are identified by multiple QTL mapping approaches. Frontiers in Plant Science. 14:1233285. doi: 10.3389/fpls.2023.1233285

Hazra, R. S†., Roy, J†., Jiang, L., Webster, D. C., Rahman, M., & Quadir, M. (2023). Biobased, macro- and nanoscale fungicide delivery approaches for plant fungi control. ACS Applied Bio Materials. 6 (7), 2698–2711. doi.org/10.1021/acsabm.3c00171

Parvin, N., Rahman, A., Roy, J., Rashid, M.H., Paul, N.C., Mahamud, M.A., Imran, S., Sakil, M.A., Uddin, F.M.J., Molla, M.E., Khan, M.A., Kabir, M.H., and Kader, M.A. (2023). Chitosan coating improves postharvest shelf-life of mango (Mangifera indica L.). Horticulturae, 9, 64. https://doi.org/10.3390/horticulturae9010064

Roy, J., del Río Mendoza, L.E., Bandillo, N. McClean P.E., & Rahman, M. (2022) Genetic mapping and genomic prediction of sclerotinia stem rot resistance to rapeseed/canola (Brassica napus L.) at seedling stage. Theoretical and Applied Genetics. https://doi.org/10.1007/s00122-022-04104-0.

Rahman, M., Hoque, A., & Roy, J. (2022) Linkage disequilibrium and population structure in a core collection of Brassica napus (L.). PLoS One 17:1–25. https://doi.org/10.1371/journal.pone.0250310

Rahman, M., Mendoza, L.E.R., Anderson, J.V., Berhow, M., Roy, J., et al., (2021) NDOLA-2, a high-yielding, open-pollinated conventional spring type canola in North Dakota. Journal of Plant Registrations 16:124–131. https://doi.org/https://doi.org/10.1002/plr2.20189

Roy, J., Shaikh, T. M., Mendoza, L. E. R., Hosain, S., Chapara, V., & Rahman, M. (2021). Genome-wide association mapping and genomic prediction for adult stage sclerotinia stem rot resistance in Brassica napus (L) under field environments. Scientific Reports 11, 21773. https://doi.org/10.1038/s41598-021-01272-9.

Roy, J. 2021. Genome-wide association mapping and genomic prediction for resistance to sclerotinia stem rot in rapeseed/canola (Brassica napus L.) germplasm collections (Doctoral dissertation, North Dakota State University). Available at: https://hdl.handle.net/10365/33600

Akte, J., Yasmin, S., Bhuiyan, M. J. H., Khatun, F., Roy, J., & Goswami, K. (2016). In vitro screening of rice genotypes using polyethylene glycol under drought stress. Progressive Agriculture, 27 (2): 128-135.